http://raquell.us/ccb/index.php?action=history&feed=atom&title=References_for_workshop_exercises 2026-04-10T10:39:43Z Revision history for this page on the wiki MediaWiki 1.16.0 http://raquell.us/ccb/index.php?title=References_for_workshop_exercises&diff=263&oldid=prev 2007-12-20T15:40:12Z

<p>Protected &quot;<a href="/ccb/index.php/References_for_workshop_exercises" title="References for workshop exercises">References for workshop exercises</a>&quot; [edit=autoconfirmed:move=autoconfirmed]</p> <table style="background-color: white; color:black;"> <tr valign='top'> <td colspan='1' style="background-color: white; color:black;">← Older revision</td> <td colspan='1' style="background-color: white; color:black;">Revision as of 15:40, 20 December 2007</td> </tr></table>

Raquell http://raquell.us/ccb/index.php?title=References_for_workshop_exercises&diff=262&oldid=prev 2007-12-20T15:39:53Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 15:39, 20 December 2007</td> </tr><tr><td colspan="2" class="diff-lineno">Line 22:</td> <td colspan="2" class="diff-lineno">Line 22:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[http://www.vcell.org/login/VCell%20Quick%20Start%20Guide.pdf Quick tips]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[http://www.vcell.org/login/VCell%20Quick%20Start%20Guide.pdf Quick tips]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[http://<del class="diffchange diffchange-inline">www.</del>vcell.org/<del class="diffchange diffchange-inline">login</del>/<del class="diffchange diffchange-inline">user_guide_4_1</del>.pdf User Guide <del class="diffchange diffchange-inline">4.1</del>]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[http://vcell.org/<ins class="diffchange diffchange-inline">userdocs</ins>/<ins class="diffchange diffchange-inline">Rel/VCellQuickStartGuide</ins>.pdf User Guide <ins class="diffchange diffchange-inline">for Current Release Version of VCell</ins>]</div></td></tr> </table>

Raquell http://raquell.us/ccb/index.php?title=References_for_workshop_exercises&diff=261&oldid=prev 2007-12-20T15:38:36Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 15:38, 20 December 2007</td> </tr><tr><td colspan="2" class="diff-lineno">Line 15:</td> <td colspan="2" class="diff-lineno">Line 15:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>---[http://vcell.org/userdocs/Rel/Tutorial_FacilitatedCalciumDiffusion.pdf Faciliated Calcium Diffusion]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>---[http://vcell.org/userdocs/Rel/Tutorial_FacilitatedCalciumDiffusion.pdf Faciliated Calcium Diffusion]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>---[http://<del class="diffchange diffchange-inline">www.</del>vcell.org/<del class="diffchange diffchange-inline">login</del>/<del class="diffchange diffchange-inline">membrane_potential</del>.pdf Membrane Potential]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>---[http://vcell.org/<ins class="diffchange diffchange-inline">userdocs/Rel</ins>/<ins class="diffchange diffchange-inline">Tutorial_FacilitatedCalciumDiffusion</ins>.pdf Membrane Potential]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The links for tutorials have been updated to point to the most up to date version.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The links for tutorials have been updated to point to the most up to date version.</div></td></tr> </table>

Raquell http://raquell.us/ccb/index.php?title=References_for_workshop_exercises&diff=260&oldid=prev 2007-12-20T15:38:01Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 15:38, 20 December 2007</td> </tr><tr><td colspan="2" class="diff-lineno">Line 13:</td> <td colspan="2" class="diff-lineno">Line 13:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>---[http://vcell.org/userdocs/Rel/Tutorial_SimpleFRAP.pdf Fluorescent Recovery After Photobleaching]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>---[http://vcell.org/userdocs/Rel/Tutorial_SimpleFRAP.pdf Fluorescent Recovery After Photobleaching]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>---[http://<del class="diffchange diffchange-inline">www.</del>vcell.org/<del class="diffchange diffchange-inline">login</del>/<del class="diffchange diffchange-inline">facil_ca_dif</del>.pdf Faciliated Diffusion]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>---[http://vcell.org/<ins class="diffchange diffchange-inline">userdocs/Rel</ins>/<ins class="diffchange diffchange-inline">Tutorial_FacilitatedCalciumDiffusion</ins>.pdf Faciliated <ins class="diffchange diffchange-inline">Calcium </ins>Diffusion]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>---[http://www.vcell.org/login/membrane_potential.pdf Membrane Potential]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>---[http://www.vcell.org/login/membrane_potential.pdf Membrane Potential]</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">The links for tutorials have been updated to point to the most up to date version.</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Virtual Cell Software Guides===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Virtual Cell Software Guides===</div></td></tr> </table>

Raquell http://raquell.us/ccb/index.php?title=References_for_workshop_exercises&diff=259&oldid=prev 2007-12-20T15:35:56Z

<p><span class="autocomment">Virtual Cell Tutorials</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 15:35, 20 December 2007</td> </tr><tr><td colspan="2" class="diff-lineno">Line 11:</td> <td colspan="2" class="diff-lineno">Line 11:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>All Virtual Cell Tutorials can be found at the [http://vcell.org/login/login.html software download site] or [http://vcell.org/login/model_vcell.html &quot;How to Model&quot;] page.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>All Virtual Cell Tutorials can be found at the [http://vcell.org/login/login.html software download site] or [http://vcell.org/login/model_vcell.html &quot;How to Model&quot;] page.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">+++</del>[http://vcell.org/userdocs/Rel/Tutorial_SimpleFRAP.pdf Fluorescent Recovery After Photobleaching]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">---</ins>[http://vcell.org/userdocs/Rel/Tutorial_SimpleFRAP.pdf Fluorescent Recovery After Photobleaching]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">+++</del>[http://www.vcell.org/login/facil_ca_dif.pdf Faciliated Diffusion]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">---</ins>[http://www.vcell.org/login/facil_ca_dif.pdf Faciliated Diffusion]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">++</del>[http://www.vcell.org/login/membrane_potential.pdf Membrane Potential]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">---</ins>[http://www.vcell.org/login/membrane_potential.pdf Membrane Potential]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Virtual Cell Software Guides===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Virtual Cell Software Guides===</div></td></tr> </table>

Raquell http://raquell.us/ccb/index.php?title=References_for_workshop_exercises&diff=258&oldid=prev 2007-12-20T15:31:56Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 15:31, 20 December 2007</td> </tr><tr><td colspan="2" class="diff-lineno">Line 9:</td> <td colspan="2" class="diff-lineno">Line 9:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Virtual Cell Tutorials===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Virtual Cell Tutorials===</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[http://<del class="diffchange diffchange-inline">www</del>.vcell.org/login/<del class="diffchange diffchange-inline">frap</del>.<del class="diffchange diffchange-inline">pdf Fluorescent Recovery After Photobleaching</del>]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">All Virtual Cell Tutorials can be found at the </ins>[http://<ins class="diffchange diffchange-inline">vcell</ins>.<ins class="diffchange diffchange-inline">org/login/login.html software download site] or [http://</ins>vcell.org/login/<ins class="diffchange diffchange-inline">model_vcell</ins>.<ins class="diffchange diffchange-inline">html &quot;How to Model&quot;</ins>] <ins class="diffchange diffchange-inline">page.</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[http://<del class="diffchange diffchange-inline">www.</del>vcell.org/<del class="diffchange diffchange-inline">login</del>/<del class="diffchange diffchange-inline">facil_ca_dif</del>.pdf <del class="diffchange diffchange-inline">Faciliated Diffusion</del>]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">+++</ins>[http://vcell.org/<ins class="diffchange diffchange-inline">userdocs/Rel</ins>/<ins class="diffchange diffchange-inline">Tutorial_SimpleFRAP</ins>.pdf <ins class="diffchange diffchange-inline">Fluorescent Recovery After Photobleaching</ins>]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[http://www.vcell.org/login/membrane_potential.pdf Membrane Potential]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">+++[http://www.vcell.org/login/facil_ca_dif.pdf Faciliated Diffusion]</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>&#160;</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">++</ins>[http://www.vcell.org/login/membrane_potential.pdf Membrane Potential]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Virtual Cell Software Guides===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Virtual Cell Software Guides===</div></td></tr> </table>

Raquell http://raquell.us/ccb/index.php?title=References_for_workshop_exercises&diff=257&oldid=prev 2007-12-20T15:23:50Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 15:23, 20 December 2007</td> </tr><tr><td colspan="2" class="diff-lineno">Line 2:</td> <td colspan="2" class="diff-lineno">Line 2:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Hunt and Murray, ''Cell Cycle''</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Hunt and Murray, ''Cell Cycle''</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Sha W., et al. Hysteresis Drives Cell-Cycle Transitions in Xenopus Leavis Egg Extracts</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Sha W., et al<ins class="diffchange diffchange-inline">. 2003</ins>. Hysteresis Drives Cell-Cycle Transitions in Xenopus Leavis Egg Extracts<ins class="diffchange diffchange-inline">. PNAS 100: 975-980.</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Tyson J.J., Modeling the Cell Division Cycle</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Tyson J.J., <ins class="diffchange diffchange-inline">1991. </ins>Modeling the Cell Division Cycle<ins class="diffchange diffchange-inline">. PNAS 88: 7328-7332.</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Goldbeter A., A Minimal Cascade Model for the Mitotic Oscillator</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Goldbeter A., <ins class="diffchange diffchange-inline">1991. </ins>A Minimal Cascade Model for the Mitotic Oscillator<ins class="diffchange diffchange-inline">. PNAS 88: 9107-9111.</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Virtual Cell Tutorials===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Virtual Cell Tutorials===</div></td></tr> </table>

Raquell http://raquell.us/ccb/index.php?title=References_for_workshop_exercises&diff=252&oldid=prev 2007-12-19T15:29:43Z

<p>Unprotected &quot;<a href="/ccb/index.php/References_for_workshop_exercises" title="References for workshop exercises">References for workshop exercises</a>&quot;</p> <table style="background-color: white; color:black;"> <tr valign='top'> <td colspan='1' style="background-color: white; color:black;">← Older revision</td> <td colspan='1' style="background-color: white; color:black;">Revision as of 15:29, 19 December 2007</td> </tr></table>

Raquell http://raquell.us/ccb/index.php?title=References_for_workshop_exercises&diff=251&oldid=prev 2007-12-19T15:25:19Z

<p><span class="autocomment">Cell Cycle</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 15:25, 19 December 2007</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Cell Cycle===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Cell Cycle===</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Hunt and Murray, Cell Cycle</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Hunt and Murray, <ins class="diffchange diffchange-inline">''</ins>Cell Cycle<ins class="diffchange diffchange-inline">''</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Sha W., et al. Hysteresis Drives Cell-Cycle Transitions in Xenopus Leavis Egg Extracts</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Sha W., et al. Hysteresis Drives Cell-Cycle Transitions in Xenopus Leavis Egg Extracts</div></td></tr> </table>

Raquell http://raquell.us/ccb/index.php?title=References_for_workshop_exercises&diff=236&oldid=prev 2007-12-19T14:55:18Z

<p>Protected &quot;<a href="/ccb/index.php/References_for_workshop_exercises" title="References for workshop exercises">References for workshop exercises</a>&quot;: Historical [edit=autoconfirmed:move=autoconfirmed]</p> <table style="background-color: white; color:black;"> <tr valign='top'> <td colspan='1' style="background-color: white; color:black;">← Older revision</td> <td colspan='1' style="background-color: white; color:black;">Revision as of 14:55, 19 December 2007</td> </tr></table>

Raquell